Adam Siepel : rechercher sur Z-Library

Année:

2011

Langue:

english

Fichier:

PDF, 501 KB

english, 2011

A Rapid, Extensive, and Transient Transcriptional Response to Estrogen Signaling in Breast Cancer Cells

Nasun Hah, Charles G. Danko, Leighton Core, Joshua J. Waterfall, Adam Siepel, John T. Lis, W. Lee Kraus

Journal:

Cell

Année:

2011

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2011

A Rapid, Extensive, and Transient Transcriptional Response to Estrogen Signaling in Breast Cancer Cells

Nasun Hah, Charles G. Danko, Leighton Core, Joshua J. Waterfall, Adam Siepel, John T. Lis, W. Lee Kraus

Journal:

Cell

Année:

2011

Langue:

english

Fichier:

PDF, 148 KB

english, 2011

Signaling Pathways Differentially Affect RNA Polymerase II Initiation, Pausing, and Elongation Rate in Cells

Danko, Charles G., Hah, Nasun, Luo, Xin, Martins, André L., Core, Leighton, Lis, John T., Siepel, Adam, Kraus, W. Lee

Journal:

Molecular Cell

Année:

2013

Langue:

english

Fichier:

PDF, 1.47 MB

english, 2013

[Statistics for Biology and Health] Statistical Methods in Molecular Evolution || Phylogenetic Hidden Markov Models

Siepel, Adam

Année:

2005

Langue:

english

Fichier:

PDF, 477 KB

english, 2005

Genome-wide inference of natural selection on human transcription factor binding sites

Arbiza, Leonardo, Gronau, Ilan, Aksoy, Bulent A, Hubisz, Melissa J, Gulko, Brad, Keinan, Alon, Siepel, Adam

Journal:

Arbiza, Leonardo, Gottipati, Srikanth, Siepel, Adam, Keinan, Alon

Année:

2013

Langue:

english

Fichier:

PDF, 715 KB

english, 2013

Contrasting X-Linked and Autosomal Diversity across 14 Human Populations

Journal:

The American Journal of Human Genetics

Année:

2014

Langue:

english

Fichier:

PDF, 2.50 MB

english, 2014

Signaling Pathways Differentially Affect RNA Polymerase II Initiation, Pausing, and Elongation Rate in Cells

Danko, Charles G., Hah, Nasun, Luo, Xin, Martins, André L., Core, Leighton, Lis, John T., Siepel, Adam, Kraus, W. Lee

Journal:

Molecular Cell

Année:

2013

Fichier:

PDF, 62 KB

2013

Correction

Danko, Charles G., Hah, Nasun, Luo, Xin, Martins, André L., Core, Leighton, Lis, John T., Siepel, Adam, Kraus, W. Lee

Journal:

Journal of the American Academy of Dermatology

Année:

1993

Langue:

english

Fichier:

PDF, 234 KB

english, 1993

Cis-regulatory elements and human evolution

Siepel, Adam, Arbiza, Leonardo

Journal:

Current Opinion in Genetics & Development

Année:

2014

Langue:

english

Fichier:

PDF, 968 KB

english, 2014

Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila

Mohammed, Jaaved, Bortolamiol-Becet, Diane, Flynt, Alex S., Gronau, Ilan, Siepel, Adam, Lai, Eric C.

Journal:

RNA

Année:

2014

Langue:

english

Fichier:

PDF, 893 KB

english, 2014

Diverse modes of evolutionary emergence and flux of conserved microRNA clusters

Mohammed, Jaaved, Siepel, Adam, Lai, Eric C.

Journal:

RNA

Année:

2014

Langue:

english

Fichier:

PDF, 776 KB

english, 2014

Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers

Core, Leighton J, Martins, André L, Danko, Charles G, Waters, Colin T, Siepel, Adam, Lis, John T

Journal:

Concurrency and Computation: Practice and Experience

Année:

2014

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2014

Enabling large-scale next-generation sequence assembly with Blacklight

Brian Couger, M., Pipes, Lenore, Squina, Fabio, Prade, Rolf, Siepel, Adam, Palermo, Robert, Katze, Michael G., Mason, Christopher E., Blood, Philip D.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 570 KB

english, 2014

Reconstructing Histories of Complex Gene Clusters on a Phylogeny

Vinař, Tomáš, Brejová, Broňa, Song, Giltae, Siepel, Adam

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 674 KB

english, 2010

Evolutionary History Reconstruction for Mammalian Complex Gene Clusters

Zhang, Yu, Song, Giltae, Vinař, Tomáš, Green, Eric D., Siepel, Adam, Miller, Webb

Journal:

SIEPEL, ADAM C., HALPERN, AARON L., MACKEN, CATHERINE, KORBER, BETTE T.M.

Année:

2009

Langue:

english

Fichier:

PDF, 966 KB

english, 2009

A Computer Program Designed to Screen Rapidly for HIV Type 1 Intersubtype Recombinant Sequences

Journal:

AIDS Research and Human Retroviruses

Année:

1995

Langue:

english

Fichier:

PDF, 510 KB

english, 1995

Combining Phylogenetic and Hidden Markov Models in Biosequence Analysis

Siepel, Adam, Haussler, David

Journal:

Gottipati, Srikanth, Arbiza, Leonardo, Siepel, Adam, Clark, Andrew G, Keinan, Alon

Année:

2004

Langue:

english

Fichier:

PDF, 179 KB

english, 2004

Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 314 KB

english, 2011

A method for calculating probabilities of fitness consequences for point mutations across the human genome

Gulko, Brad, Hubisz, Melissa J, Gronau, Ilan, Siepel, Adam

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 960 KB

english, 2015

Identification of active transcriptional regulatory elements from GRO-seq data

Danko, Charles G, Hyland, Stephanie L, Core, Leighton J, Martins, Andre L, Waters, Colin T, Lee, Hyung Won, Cheung, Vivian G, Kraus, W Lee, Lis, John T, Siepel, Adam

Journal:

Nature Methods

Année:

2015

Langue:

english

Fichier:

PDF, 656 KB

english, 2015

An Algorithm to Enumerate Sorting Reversals for Signed Permutations

Siepel, Adam C.

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 487 KB

english, 2003

GAGA Factor Maintains Nucleosome-Free Regions and Has a Role in RNA Polymerase II Recruitment to Promoters

Fuda, Nicholas J., Guertin, Michael J., Sharma, Sumeet, Danko, Charles G., Martins, André L., Siepel, Adam, Lis, John T., Lieb, Jason D.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2015

Identification and Classification of Conserved RNA Secondary Structures in the Human Genome

Pedersen, Jakob Skou, Bejerano, Gill, Siepel, Adam, Rosenbloom, Kate, Lindblad-Toh, Kerstin, Lander, Eric S., Kent, Jim, Miller, Webb, Haussler, David

Journal:

Niederberger, Theresa, Etzold, Stefanie, Lidschreiber, Michael, Maier, Kerstin C., Martin, Dietmar E., Fröhlich, Holger, Cramer, Patrick, Tresch, Achim, Siepel, Adam

Année:

2006

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2006

MC EMiNEM Maps the Interaction Landscape of the Mediator

Journal:

Capra, John A., Hubisz, Melissa J., Kostka, Dennis, Pollard, Katherine S., Siepel, Adam, Coop, Graham

Année:

2012

Langue:

english

Fichier:

PDF, 769 KB

english, 2012

A Model-Based Analysis of GC-Biased Gene Conversion in the Human and Chimpanzee Genomes

Journal:

Altschul, Stephen F., Wootton, John C., Zaslavsky, Elena, Yu, Yi-Kuo, Siepel, Adam

Année:

2013

Langue:

english

Fichier:

PDF, 934 KB

english, 2013

The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment

Journal:

Magwene, Paul M., Willis, John H., Kelly, John K., Siepel, Adam

Année:

2010

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2010

The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.52 MB

english, 2011

Fast Statistical Alignment

Bradley, Robert K., Roberts, Adam, Smoot, Michael, Juvekar, Sudeep, Do, Jaeyoung, Dewey, Colin, Holmes, Ian, Pachter, Lior, Siepel, Adam

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2009

Forces Shaping the Fastest Evolving Regions in the Human Genome

Pollard, Katherine S., Salama, Sofie R., King, Bryan, Kern, Andrew D., Dreszer, Tim, Katzman, Sol, Siepel, Adam, Pedersen, Jakob S., Bejerano, Gill, Baertsch, Robert, Rosenbloom, Kate R., Kent, Jim, H

Journal:

Guertin, Michael J., Martins, André L., Siepel, Adam, Lis, John T., Snyder, Michael

Année:

2006

Langue:

english

Fichier:

PDF, 221 KB

english, 2006

Accurate Prediction of Inducible Transcription Factor Binding Intensities In Vivo

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.49 MB

english, 2012

Identifying Single Copy Orthologs in Metazoa

Creevey, Christopher J., Muller, Jean, Doerks, Tobias, Thompson, Julie D., Arendt, Detlev, Bork, Peer, Siepel, Adam

Journal:

Rasmussen, Matthew D., Hubisz, Melissa J., Gronau, Ilan, Siepel, Adam, Coop, Graham

Année:

2011

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2011

Genome-Wide Inference of Ancestral Recombination Graphs

Journal:

Siepel, Adam, Haussler, David

Année:

2014

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2014

[ACM Press the eighth annual international conference - San Diego, California, USA (2004.03.27-2004.03.31)] Proceedings of the eighth annual international conference on Computational molecular biology - RECOMB '04 - Computational identification of evolutionarily conserved exons

Année:

2004

Langue:

english

Fichier:

PDF, 274 KB

english, 2004

Distinguishing noise from signal in patterns of genomic divergence in a highly polymorphic avian radiation

Campagna, Leonardo, Gronau, Ilan, Silveira, Luís Fábio, Siepel, Adam, Lovette, Irby J.

Journal:

Molecular Ecology

Année:

2015

Langue:

english

Fichier:

PDF, 577 KB

english, 2015

Is a super-enhancer greater than the sum of its parts?

Dukler, Noah, Gulko, Brad, Huang, Yi-Fei, Siepel, Adam

Journal:

Huang, Yi-Fei, Gulko, Brad, Siepel, Adam

Année:

2016

Langue:

english

Fichier:

PDF, 407 KB

english, 2016

Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data

Journal:

Mohammed, Jaaved, Flynt, Alex S., Panzarino, Alexandra M., Mondal, Md Mosharrof Hussein, DeCruz, Matthew, Siepel, Adam, Lai, Eric C.

Année:

2017

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2017

Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol

Dukler, Noah, Booth, Gregory T., Huang, Yi-Fei, Tippens, Nathaniel, Waters, Colin T., Danko, Charles G., Lis, John T., Siepel, Adam

Journal:

Genome Research

Année:

2017

Langue:

english

Fichier:

PDF, 7.88 MB

english, 2017

Deep experimental profiling of microRNA diversity, deployment, and evolution across the Drosophila genus

Journal:

Genome Research

Année:

2017

Langue:

english

Fichier:

PDF, 3.05 MB

english, 2017

Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution

Fang, Han, Huang, Yi-Fei, Radhakrishnan, Aditya, Siepel, Adam, Lyon, Gholson J., Schatz, Michael C.

Journal:

Cell Systems

Année:

2018

Langue:

english

Fichier:

PDF, 2.53 MB

english, 2018

Patterns of Positive Selection in Six Mammalian Genomes

Kosiol, Carolin, Vinař, Tomáš, da Fonseca, Rute R., Hubisz, Melissa J., Bustamante, Carlos D., Nielsen, Rasmus, Siepel, Adam, Schierup, Mikkel H.

Journal: